miRBase entry: aca-mir-21

Stem-loop aca-mir-21


Accession
MI0018814
Description
Anolis carolinensis aca-mir-21 precursor miRNA
Gene family
MIPF0000060; mir-21


Sequence

cggaUAGCUUAUCAGACUGAUGUUGAcuguuggaugucauggCAACAACAGUCGGUAGGCUGUcuga
(((((((((((((.(((((.(((((.((((........))))))))).)))))))))))))))))).

Structure
-             A     A     A    ugg 
 cggaUAGCUUAUC GACUG UGUUG cugu   a
 ||||||||||||| ||||| ||||| ||||    
 gucUGUCGGAUGG CUGAC ACAAC ggua   u
a             -     A     -    cug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL343470.1: 228465-228531 [-]

Database links

Mature aca-miR-21-5p

Accession MIMAT0021865
Description Anolis carolinensis aca-miR-21-5p mature miRNA
Sequence 5 - UAGCUUAUCAGACUGAUGUUGA - 26
Evidence experimental
Illumina [1]

Mature aca-miR-21-3p

Accession MIMAT0021866
Description Anolis carolinensis aca-miR-21-3p mature miRNA
Sequence 43 - CAACAACAGUCGGUAGGCUGU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107