miRBase entry: aca-mir-215

Stem-loop aca-mir-215

Accession

MI0018818

Description

Anolis carolinensis aca-mir-215 precursor miRNA

Gene family

MIPF0000063; mir-192

Sequence

aaaauggaggcuuaggguaAUGACCUAUGAUUUGACAGACUgugcuuucuaugucugcCUGUCAUUUCUGUAGGCCAAUAcucuguacgcccucac
....(((.(((.(((((((.((.(((((((..((((((.(.(.((.......))).).))))))..)).))))).)).)))))))...))).))).

Structure

aaaa   a   --u       A  A     -  UU      A U u  uu 
    ugg ggc   uagggua UG CCUAU GA  UGACAG C g gc  u
    ||| |||   ||||||| || ||||| ||  |||||| | | ||  c
    acu ccg   gucucAU AC GGAUG CU  ACUGUC g c ug  u
---c   c   cau       A  C     U  UU      c u -  ua

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chr1: 243290652-243290747 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-215

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-215-5p

Accession	MIMAT0021873
Description	Anolis carolinensis aca-miR-215-5p mature miRNA
Sequence	20 - AUGACCUAUGAUUUGACAGACU - 41
Evidence	experimental Illumina [1]

Mature aca-miR-215-3p

Accession	MIMAT0021874
Description	Anolis carolinensis aca-miR-215-3p mature miRNA
Sequence	59 - CUGUCAUUUCUGUAGGCCAAUA - 80
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107