miRBase entry: aca-mir-216b

Stem-loop aca-mir-216b


Accession
MI0018820
Description
Anolis carolinensis aca-mir-216b precursor miRNA
Gene family
MIPF0000054; mir-216


Sequence

ucaaagucacagacugagAAAUCUCUGCAGGCAAAUGUGAugucuugaccagcaaucucACAGUUACCAGCAGAGGUUCUgcaaucuggacugcu
....((((.((((.((((((.(((((((.((....((((((((........)))...)))))....)).))))))))))).)).))))))))...

Structure
ucaa    a    c  -    A       A  CAAA     ---   cuu 
    aguc caga ug agAA UCUCUGC GG    UGUGA   ugu   g
    |||| |||| || |||| ||||||| ||    |||||   |||    
    ucag gucu ac UCUU GGAGACG CC    ACAcu   acg   a
-ucg    -    a  g    -       A  AUUG     cua   acc 


Annotation confidence Not enough data
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Genome context
chr1: 256248873-256248967 [-]

Database links

Mature aca-miR-216b-5p

Accession MIMAT0021876
Description Anolis carolinensis aca-miR-216b-5p mature miRNA
Sequence 19 - AAAUCUCUGCAGGCAAAUGUGA - 40
Evidence experimental
Illumina [1]

Mature aca-miR-216b-3p

Accession MIMAT0021877
Description Anolis carolinensis aca-miR-216b-3p mature miRNA
Sequence 60 - ACAGUUACCAGCAGAGGUUCU - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107