miRBase entry: aca-mir-221

Stem-loop aca-mir-221

Accession

MI0018828

Description

Anolis carolinensis aca-mir-221 precursor miRNA

Gene family

MIPF0000051; mir-221

Sequence

uuggggccugAACCUGGCAUACAAUGUAGAAUUcuguuuguuaagcaacAGCUACAUUGUCUGCUGGGUUUcaggcugucu
..(.(((((((((((((((.(((((((((....(((((.((...)))))))))))))))).))))))).)))))))).)..

Structure

uu g        -       U         AAUU     u  u 
  g ggccugAA CCUGGCA ACAAUGUAG    cuguu gu  
  | |||||||| ||||||| |||||||||    ||||| || a
  u ucggacUU GGGUCGU UGUUACAUC    GAcaa cg  
uc g        U       C         ----     -  a

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chr3: 135996379-135996459 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-221

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-221-5p

Accession	MIMAT0021889
Description	Anolis carolinensis aca-miR-221-5p mature miRNA
Sequence	11 - AACCUGGCAUACAAUGUAGAAUU - 33
Evidence	experimental Illumina [1]

Mature aca-miR-221-3p

Accession	MIMAT0021890
Description	Anolis carolinensis aca-miR-221-3p mature miRNA
Sequence	50 - AGCUACAUUGUCUGCUGGGUUU - 71
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107