miRBase entry: aca-mir-23a

Stem-loop aca-mir-23a


Accession
MI0018831
Description
Anolis carolinensis aca-mir-23a precursor miRNA
Gene family
MIPF0000027; mir-23


Sequence

ccgcugccagcuGGGGUUCCUGGUGAUGUGAUUUuauuuugguguucagaAUCACAUUGCCAGGGAUUUCCaaccaucagugagcuaccgca
.(((((...(.((((((((((((((((((((((((............))))))))))))))))))).))))).)...))))).((....)).

Structure
---------c     cca c     -                   auuuu 
          cgcug   g uGGGG UUCCUGGUGAUGUGAUUUu     g
          |||||   | ||||| |||||||||||||||||||      
          gugac   c aCCUU AGGGACCGUUACACUAaga     g
acgccaucga     uac a     U                   cuugu 


Annotation confidence Not enough data
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Genome context
chr2: 29158329-29158420 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from aca-mir-23a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-23a-5p

Accession MIMAT0021895
Description Anolis carolinensis aca-miR-23a-5p mature miRNA
Sequence 13 - GGGGUUCCUGGUGAUGUGAUUU - 34
Evidence experimental
Illumina [1]

Mature aca-miR-23a-3p

Accession MIMAT0021896
Description Anolis carolinensis aca-miR-23a-3p mature miRNA
Sequence 51 - AUCACAUUGCCAGGGAUUUCC - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107