miRBase entry: aca-mir-27b

Stem-loop aca-mir-27b


Accession
MI0018838
Description
Anolis carolinensis aca-mir-27b precursor miRNA
Gene family
MIPF0000036; mir-27

Literature search
1 open access papers mention aca-mir-27b
(1 sentences)

Sequence

ugaggugcAGAGCUUAGCUGAUUGGUGAACagugauugauuuccucuuugUUCACAGUGGCUAAGUUCUGCAccua
..(((((((((((((((((.((((.(((((((.((.........)).)))))))))))))))))))))))))))).

Structure
ug                 G    G       u  uug 
  aggugcAGAGCUUAGCU AUUG UGAACag ga   a
  ||||||||||||||||| |||| ||||||| ||   u
  uccACGUCUUGAAUCGG UGAC ACUUguu cu   u
-a                 -    -       u  ccu 


Annotation confidence Not enough data
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Genome context
chr2: 40591774-40591849 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from aca-mir-27b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-27b-5p

Accession MIMAT0021907
Description Anolis carolinensis aca-miR-27b-5p mature miRNA
Sequence 9 - AGAGCUUAGCUGAUUGGUGAAC - 30
Evidence experimental
Illumina [1]

Mature aca-miR-27b-3p

Accession MIMAT0021908
Description Anolis carolinensis aca-miR-27b-3p mature miRNA
Sequence 51 - UUCACAGUGGCUAAGUUCUGCA - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107