miRBase entry: aca-mir-2970

Stem-loop aca-mir-2970


Accession
MI0018839
Description
Anolis carolinensis aca-mir-2970 precursor miRNA
Gene family
MIPF0001328; mir-2970


Sequence

agaucugucacugcaGACAGUCAGUAGUUGGUCUGGcauaagcagaaaguuUCAGAUCACCUCUUGGCUGUGAguaguguggagcc
...((((.((((((..((((((((.((.((((((((....(((.....))))))))))).)).))))))))..))))))))))...

Structure
aga    u      aG        U  U        caua   a 
   ucug cacugc  ACAGUCAG AG UGGUCUGG    agc g
   |||| ||||||  |||||||| || ||||||||    ||| a
   aggu gugaug  UGUCGGUU UC ACUAGACU    uug a
ccg    -      AG        C  C        ----   a 


Annotation confidence Not enough data
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Genome context
chr2: 187861413-187861498 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from aca-mir-2970
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-2970-5p

Accession MIMAT0021909
Description Anolis carolinensis aca-miR-2970-5p mature miRNA
Sequence 16 - GACAGUCAGUAGUUGGUCUGG - 36
Evidence experimental
Illumina [1]

Mature aca-miR-2970-3p

Accession MIMAT0021910
Description Anolis carolinensis aca-miR-2970-3p mature miRNA
Sequence 52 - UCAGAUCACCUCUUGGCUGUGA - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107