miRBase entry: aca-mir-29a-2

Stem-loop aca-mir-29a-2

Accession

MI0018841

Description

Anolis carolinensis aca-mir-29a-2 precursor miRNA

Gene family

MIPF0000009; mir-29

Sequence

cgucucuuacacaggcUGACCGAUUUCUCUUGGUGUUCagagucuuaguuuuugucUAGCACCAUUUGAAAUCGGUUaugauguagggggaaaagc
..(((((((((((...(((((((((((...(((((((.(((.............))))))))))...))))))))))))).)))))))))......

Structure

----cg         -  ggc           UCU       C   gucuu 
      ucucuuaca ca   UGACCGAUUUC   UGGUGUU aga     a
      ||||||||| ||   |||||||||||   ||||||| |||     g
      gggggaugu gu   aUUGGCUAAAG   ACCACGA Ucu     u
cgaaaa         a  ---           UUU       -   guuuu

Annotation confidence Not enough data

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Genome context

GL343255.1: 1943470-1943565 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-29a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-29a-3p

Accession	MIMAT0021912
Description	Anolis carolinensis aca-miR-29a-3p mature miRNA
Sequence	57 - UAGCACCAUUUGAAAUCGGUU - 77
Evidence	experimental Illumina [1]

Mature aca-miR-29a-2-5p

Accession	MIMAT0021913
Description	Anolis carolinensis aca-miR-29a-2-5p mature miRNA
Sequence	17 - UGACCGAUUUCUCUUGGUGUUC - 38
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107