miRBase entry: aca-mir-31

Stem-loop aca-mir-31


Accession
MI0018852
Description
Anolis carolinensis aca-mir-31 precursor miRNA
Gene family
MIPF0000064; mir-31


Sequence

auucagagcuggagcggAGGCAAGAUGUUGGCAUAGCUgaugaguuaagaaccugcUAUGCCAACAUAUUGCCCUCuuuccug
..........((((.((((((((.(((((((((((((.................))))))))))))).))).)))))))))..

Structure
auucagagcu    c     -   G             Ugaugag 
          ggag ggAGG CAA AUGUUGGCAUAGC       u
          |||| ||||| ||| |||||||||||||       u
          ccuu uCUCC GUU UACAACCGUAUcg       a
--------gu    -     C   A             uccaaga 


Annotation confidence Not enough data
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Genome context
chr2: 61607424-61607506 [+]

Database links

Mature aca-miR-31-5p

Accession MIMAT0021930
Description Anolis carolinensis aca-miR-31-5p mature miRNA
Sequence 18 - AGGCAAGAUGUUGGCAUAGCU - 38
Evidence experimental
Illumina [1]

Mature aca-miR-31-3p

Accession MIMAT0021931
Description Anolis carolinensis aca-miR-31-3p mature miRNA
Sequence 57 - UAUGCCAACAUAUUGCCCUC - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107