Stem-loop aca-mir-33-1

Accession

MI0018854

Description

Anolis carolinensis aca-mir-33-1 precursor miRNA

Gene family

MIPF0000070; mir-33

Sequence

ugcuggguggcagcuguaGUGCAUUGUAGUUGCAUUGCAuguucuagcaguauuugugCAAUGUUUCCGCAGUGCAAUAcagaggcauaccguaucucucc
.....((((((..(((((.((((((((.(..((((((((((.............))))))))))..).)))))))).)))))..)).))))..........

Structure

-----ugcug    -  ag     G        A UU          uucua 
          ggug gc  cugua UGCAUUGU G  GCAUUGCAug     g
          |||| ||  ||||| |||||||| |  ||||||||||     c
          ccau cg  gacAU ACGUGACG C  UGUAACgugu     a
ccucucuaug    a  ga     A        C UU          uuaug 

Annotation confidence Not enough data

Genome context

chr5: 26778855-26778955 [+]

Mature aca-miR-33-5p

• Accession: MIMAT0021934
• Description: Anolis carolinensis aca-miR-33-5p mature miRNA
• Sequence: 19 - GUGCAUUGUAGUUGCAUUGCA - 39
• Evidence: experimental ; Illumina [1]

Mature aca-miR-33-1-3p

• Accession: MIMAT0021935
• Description: Anolis carolinensis aca-miR-33-1-3p mature miRNA
• Sequence: 59 - CAAUGUUUCCGCAGUGCAAUA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107