miRBase entry: aca-mir-429

Stem-loop aca-mir-429


Accession
MI0018866
Description
Anolis carolinensis aca-mir-429 precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

auucccaccgccugcugaucgcuGUCUUACCAGACAAAGUUAGAucuuagcuauccccgucUAAUACUGUCUGGUAAUGCCGUcgaucgcauuggcaaug
.........((((((.((((((.((.((((((((((..(((((((.............)))))))..)))))))))).)).).))))))))..)))....

Structure
auucccacc   --   u     - u  C          AA       cuuag 
         gcc  ugc gaucg c GU UUACCAGACA  GUUAGAu     c
         |||  ||| ||||| | || ||||||||||  |||||||     u
         cgg  acg cuagc G CG AAUGGUCUGU  UAAUcug     a
-----guaa   uu   -     U C  U          CA       ccccu 


Annotation confidence Not enough data
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Genome context
GL343647.1: 283324-283423 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from aca-mir-429
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-429-5p

Accession MIMAT0021956
Description Anolis carolinensis aca-miR-429-5p mature miRNA
Sequence 24 - GUCUUACCAGACAAAGUUAGA - 44
Evidence experimental
Illumina [1]

Mature aca-miR-429-3p

Accession MIMAT0021957
Description Anolis carolinensis aca-miR-429-3p mature miRNA
Sequence 62 - UAAUACUGUCUGGUAAUGCCGU - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107