miRBase entry: aca-mir-449b

Stem-loop aca-mir-449b


Accession
MI0018868
Description
Anolis carolinensis aca-mir-449b precursor miRNA
Gene family
MIPF0000133; mir-449


Sequence

gacugugucgcuuUGGCAGUGCACUACUAGCUGGCuguugagauauauucauuuuuacagugguuaguugcacuccacacugaugcaguc
((((((((((...(((.((((((..((((((..(((((.(((((......))))).))))).)))))))))))))))...))))))))))

Structure
          cuu   C      CU      UG     u     au 
gacugugucg   UGG AGUGCA  ACUAGC  GCugu gagau  a
||||||||||   ||| ||||||  ||||||  ||||| |||||   
cugacguagu   acc ucacgu  ugauug  ugaca uuuua  u
          cac   -      --      -g     u     cu 


Annotation confidence Not enough data
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Genome context
chr2: 2663679-2663768 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from aca-mir-449b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-449b

Accession MIMAT0021959
Description Anolis carolinensis aca-miR-449b mature miRNA
Sequence 14 - UGGCAGUGCACUACUAGCUGGC - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107