miRBase entry: aca-mir-7-1

Stem-loop aca-mir-7-1


Accession
MI0018882
Description
Anolis carolinensis aca-mir-7-1 precursor miRNA
Gene family
MIPF0000022; mir-7


Sequence

uguggcugguuucugggUGGAAGACUAGUGAUUUUGUUGUucugacuuauaauuuagaCAACAAAUCGUAGCCUGCCGCccagcgaccacagccgagcac
..(((((((((.((((((((.((.(((.((((((.(((((.((((........)))))))))))))))))).)).)))))))).))))..))))).....

Structure
---ug     --    u        A  A   G      U     u    cuu 
     uggcu  gguu cugggUGG AG CUA UGAUUU GUUGU cuga   a
     |||||  |||| |||||||| || ||| |||||| ||||| ||||    
     gccga  ccag gaccCGCC UC GAU GCUAAA CAACa gauu   u
cacga     ca    c        G  C   -      -     -    uaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature aca-miR-7-5p

Accession MIMAT0021983
Description Anolis carolinensis aca-miR-7-5p mature miRNA
Sequence 18 - UGGAAGACUAGUGAUUUUGUUGU - 40
Evidence experimental
Illumina [1]

Mature aca-miR-7-1-3p

Accession MIMAT0021984
Description Anolis carolinensis aca-miR-7-1-3p mature miRNA
Sequence 59 - CAACAAAUCGUAGCCUGCCGC - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107