miRBase entry: aca-mir-5398

Stem-loop aca-mir-5398


Accession
MI0018900
Description
Anolis carolinensis aca-mir-5398 precursor miRNA


Sequence

guauggguccuuCUGUUAAUCUCGGCAACUGCuuauuaguaaguggACAGUCACUGGGAUUGACAGAaggaucgaucc
..((.((((((((((((((((((((..((((.(((((....))))).))))..)))))))))))))))))))).))..

Structure
gu  g                    CA    C     a 
  au gguccuuCUGUUAAUCUCGG  ACUG uuauu g
  || ||||||||||||||||||||  |||| |||||  
  ua cuaggaAGACAGUUAGGGUC  UGAC gguga u
cc  g                    AC    A     a 


Annotation confidence Not enough data
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Genome context
chr4: 95943331-95943408 [-]

Database links

Mature aca-miR-5398-5p

Accession MIMAT0022006
Description Anolis carolinensis aca-miR-5398-5p mature miRNA
Sequence 13 - CUGUUAAUCUCGGCAACUGC - 32
Evidence experimental
Illumina [1]

Mature aca-miR-5398-3p

Accession MIMAT0022007
Description Anolis carolinensis aca-miR-5398-3p mature miRNA
Sequence 47 - ACAGUCACUGGGAUUGACAGA - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107