miRBase entry: aca-mir-5399

Stem-loop aca-mir-5399


Accession
MI0018901
Description
Anolis carolinensis aca-mir-5399 precursor miRNA


Sequence

guuggccagaagaCCAGAUUAUUUGUUGCUGUGCAauuguuuuguauaaaaUUGCAAGAGAAAUAGUCUGACauucugacuuau
...((.(((((...((((((((((.(((((((((((.....))))))).....))))...))))))))))...))))).))...

Structure
guu  c     gaC          --G    -----       u 
   gg cagaa   CAGAUUAUUU   UUGC     UGUGCAa u
   || |||||   ||||||||||   ||||     ||||||| g
   uc gucuu   GUCUGAUAAA   AACG     auauguu u
uau  a     aCA          GAG    UUaaa       u 


Annotation confidence Not enough data
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Genome context
chr3: 25386679-25386762 [-]

Database links

Mature aca-miR-5399-5p

Accession MIMAT0022008
Description Anolis carolinensis aca-miR-5399-5p mature miRNA
Sequence 14 - CCAGAUUAUUUGUUGCUGUGCA - 35
Evidence experimental
Illumina [1]

Mature aca-miR-5399-3p

Accession MIMAT0022009
Description Anolis carolinensis aca-miR-5399-3p mature miRNA
Sequence 52 - UUGCAAGAGAAAUAGUCUGAC - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107