miRBase entry: aca-mir-5442

Stem-loop aca-mir-5442


Accession
MI0018945
Description
Anolis carolinensis aca-mir-5442 precursor miRNA


Sequence

cauggccugaugaaggggcacaguuuccccaugucuauuagccaaggcaaaacagcugACAGGCAAGGGGAAGCGGUAcuucuccaucaggcugcc
...(((((((((.(((((.((.((((((((.(((((.(((((...(......).))))).))))).)))))))).)).))))).)))))))))...

Structure
cau         a     c  a        a     a     caa gc 
   ggccugaug agggg ac guuucccc ugucu uuagc   g  a
   ||||||||| ||||| || |||||||| ||||| |||||   |   
   ucggacuac ucuuc UG CGAAGGGG ACGGA Agucg   c  a
ccg         c     A  G        A     C     --a aa 


Annotation confidence Not enough data
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Genome context
GL343456.1: 176730-176825 [-]

Database links

Mature aca-miR-5442

Accession MIMAT0022064
Description Anolis carolinensis aca-miR-5442 mature miRNA
Sequence 59 - ACAGGCAAGGGGAAGCGGUA - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107