miRBase entry: aau-MIR160

Stem-loop aau-MIR160


Accession
MI0018979
Description
Acacia auriculiformis aau-MIR160 precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
1 open access papers mention aau-MIR160
(4 sentences)

Sequence

agcaugcaugacuccucgcacgccauucgcuaaggccaccacuucacugaugggcuaugcaaaUGGCAUACAGGGAGCCAGGCAcucc
....(((.((.(((((.....((((((.((..((.(((.((......)).))).))..)).)))))).....))))).)).)))....

Structure
agca   a  a     cgcac      c  ua  g   c  cu 
    ugc ug cuccu     gccauu gc  ag cca ca  u
    ||| || |||||     |||||| ||  || ||| ||   
    ACG AC GAGGG     CGGUaa cg  uc ggu gu  c
ccuc   G  C     ACAUA      a  ua  g   a  ca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature aau-miR160

Accession MIMAT0022672
Description Acacia auriculiformis aau-miR160 mature miRNA
Sequence 64 - UGGCAUACAGGGAGCCAGGCA - 84
Evidence not_experimental

References

  1. PubMed ID: 21729267
    Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing
    Wong MM, Cannon CH, Wickneswari R
    BMC Genomics (2011) 12:342