Stem-loop aau-MIR172

Accession

MI0018980

Description

Acacia auriculiformis aau-MIR172 precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

1 open access papers mention aau-MIR172
(6 sentences)

Sequence

gcagauguagcaucaucaagauucacaugcaaaugcaacaaguggaagugagauuauuuuugaaugauagaugcaaccuucuaaucaaaaucucucucucucucucucucucuguggccacuugguuucuuucggaacUGAGAAUCUUGAUGAUGCUGCAUcagc
((.(((((((((((((((((((((.(((((....))).(((((((..(.((((........((..((.((((.................)))).))..))........))))..)..)))))))(((((....))))))).))))))))))))))))))))).))

Structure

  a                     a  ---ugcaaaugcaa       aa -u    uuauuuuu  au  u    gcaaccu 
gc gauguagcaucaucaagauuc ca              caagugg  g  gaga        ga  ga agau       u
|| ||||||||||||||||||||| ||              |||||||  |  ||||        ||  || ||||       c
cg cUACGUCGUAGUAGUUCUAAG GU              guucacc  u  cucu        cu  cu ucua       u
  a                     A  caaggcuuucuuug       gg gu    cucucucu  cu  c    aaacuaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature aau-miR172

• Accession: MIMAT0022673
• Description: Acacia auriculiformis aau-miR172 mature miRNA
• Sequence: 139 - UGAGAAUCUUGAUGAUGCUGCAU - 161
• Evidence: not_experimental

References

1. PubMed ID: 21729267
   Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing
   Wong MM, Cannon CH, Wickneswari R
   BMC Genomics (2011) 12:342