Stem-loop aau-MIR162

Accession

MI0018984

Description

Acacia auriculiformis aau-MIR162 precursor miRNA

Gene family

MIPF0000127; MIR162_1

Literature search

1 open access papers mention aau-MIR162
(3 sentences)

Sequence

ggggguguaagucacuggaggcagcgguucaucgaucucuuccugaauuuuguugugugaaaagcgcaaagcaugaaucggUCGAUAAACCUCUGCAUCCAGcgcucacuuugcc
.((((((..((.(.(((((.((((.((((.(((((((..(((.((.......((((((.....))))))..)).)))..))))))).)))).)))).))))).)))))))))...

Structure

--g      ua  u a     g    c    c       uc   c  aauuuug      g 
   ggggug  ag c cugga gcag gguu aucgauc  uuc ug       uugugu a
   ||||||  || | ||||| |||| |||| |||||||  ||| ||       |||||| a
   uuucac  uc g GACCU CGUC CCAA UAGCUgg  aag ac       aacgcg a
ccg      --  - c     A    U    A       cu   u  -----ga      a 

Annotation confidence Not enough data

Genome context

Unknown

Mature aau-miR162

• Accession: MIMAT0022677
• Description: Acacia auriculiformis aau-miR162 mature miRNA
• Sequence: 82 - UCGAUAAACCUCUGCAUCCAG - 102
• Evidence: not_experimental

References

1. PubMed ID: 21729267
   Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing
   Wong MM, Cannon CH, Wickneswari R
   BMC Genomics (2011) 12:342