Stem-loop amg-MIR319

Accession

MI0018986

Description

Acacia mangium amg-MIR319 precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

1 open access papers mention amg-MIR319
(6 sentences)

Sequence

aaggagcuuccuucaguccacucauggauaggguaaaggguuugaauuagcugcugacucauucauucaaacacaauagaacacagguuucuucaauacaggcuauugugaaugugugaaugaugcaggagguaaauuucauccuuuucuugucuuugcUUGGACUGAAGGGAGCUCCCUuu
..((((((((((((((((((..((.((((((((.(((((((..((.(((.((.(((..((((((((.((..((((((((.......(......)........))))))))..)).))))))))..))).)).))).))..))))))))))))))).))..))))))))))))))))))....

Structure

--aa                  cu  u        u       uu  a   g  g   ac        u  aa        -aacacag uu 
    ggagcuuccuucagucca  ca ggauaggg aaagggu  ga uua cu cug  ucauucau ca  cacaauag        g  u
    ||||||||||||||||||  || |||||||| |||||||  || ||| || |||  |||||||| ||  ||||||||        |   
    CCUCGAGGGAAGUCAGGU  gu ucuguucu uuuccua  uu aau ga gac  aguaagug gu  guguuauc        c  c
uuUC                  Uc  u        -       cu  a   g  g   gu        u  aa        ggacauaa uu 

Annotation confidence Not enough data

Genome context

Unknown

Mature amg-miR319

• Accession: MIMAT0022679
• Description: Acacia mangium amg-miR319 mature miRNA
• Sequence: 160 - UUGGACUGAAGGGAGCUCCCU - 180
• Evidence: not_experimental

References

1. PubMed ID: 21729267
   Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing
   Wong MM, Cannon CH, Wickneswari R
   BMC Genomics (2011) 12:342