miRBase entry: pti-MIR5472

Stem-loop pti-MIR5472


Accession
MI0018990
Description
Phaeodactylum tricornutum pti-MIR5472 precursor miRNA


Sequence

uucuugucauAAAAUGUUGCGCUAGUCCAAGAgcuuuaagaugcuuaccacccuucacaucggcgugccaaauucgaucccgucgauugcuagcgaaaugaaggagcucaagcugacgagagcgaucgcacuuccucagcaucuggaaagcgucaccgauaaaugcaauauugugucuggucauacggggaguccguuacuagcucaagaaaaccauuucgucaacagaagacaacacuacgauucaaucgcaagcuuaaacaacgcagguauucaauuugccgaguccucuaggaugagugccgcauuacagugcuuccg
............(((((.(((((.((((.(((((((...(((((((.(((.((((((..(((.(..((.....(((((...)))))..))..))))..)))))).......(((((.(((.((....))..))).)))))...))).)))))))......(((((.....(((.(.(((((...((((.....)))).)))))).)))......))))).(((.......))).......((((...))))...((.........)).((((.......)))))))..)))).)))).))))).)))))............

Structure
uucuugucauAA     U     A    A    --   ------------------------------------------------------------------------------------------------------------------------------uaa       a   --------------------------------------c      ca   g gu  caaau     c 
            AAUGU GCGCU GUCC AGAg  cuu                                                                                                                                 gaugcuu cca                                       ccuuca  ucg c  gc     ucgau  
            ||||| ||||| |||| ||||  |||                                                                                                                                 ||||||| |||                                       ||||||  ||| |  ||     ||||| c
            uuacg cguga uagg ucuc  gag                                                                                                                                 cugcgaa ggu                                       ggaagu  agc g  cg     agcug  
gccuucgugaca     c     g    a    cu   ccguuuaacuuauggacgcaacaaauucgaacgcuaacuuagcaucacaacagaagacaacugcuuuaccaaaagaacucgaucauugccugaggggcauacuggucuguguuauaacguaaauagcca       a   cuacgacuccuucacgcuagcgagagcagucgaacucga      aa   - au  ---uu     c 


Annotation confidence Not enough data
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Genome context
CM000613.1: 761305-761625 [-]

Database links

Mature pti-miR5472

Accession MIMAT0022105
Description Phaeodactylum tricornutum pti-miR5472 mature miRNA
Sequence 11 - AAAAUGUUGCGCUAGUCCAAGA - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21718527
    Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis
    Huang A, He L, Wang G
    BMC Genomics (2011) 12:337