miRBase entry: pti-MIR5474

Stem-loop pti-MIR5474


Accession
MI0018992
Description
Phaeodactylum tricornutum pti-MIR5474 precursor miRNA


Sequence

gaguggcguuccccguuugcauuuccgucaacgacauugucugcaaucauucgcccuugccaaacgaagaacggguaagugccgucccaugugguauagagaaaaauggcguaccugccguacaaaauAACCUGUGGUGGUCGACACAAGuaugccacga
..(((((((..(((((((........(.((((((.((((....))))...)))...))))........)))))))...(((.(((((((((.(((.((.......(((((......)))))......)))))))))).)).)).)))....)))))))..

Structure
ga       uccccguuugcauuuccgucaacgacauugucugcaaucauucgcccuugccaaacgaagaacggguaa   c  -  -     u   a  gagaaaa     gu 
  guggcgu                                                                     gug cg uc ccaug ggu ua       auggc  a
  |||||||                                                                     ||| || || ||||| ||| ||       |||||   
  caccgua                                                                     CAC GC GG GGUGU CCA Au       ugccg  c
ag       -----------------------------------------------------------------uGAA   A  U  U     -   -  -aaaaca     uc 


Annotation confidence Not enough data
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Genome context
CM000617.1: 663006-663165 [+]

Database links

Mature pti-miR5474

Accession MIMAT0022107
Description Phaeodactylum tricornutum pti-miR5474 mature miRNA
Sequence 129 - AACCUGUGGUGGUCGACACAAG - 150
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21718527
    Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis
    Huang A, He L, Wang G
    BMC Genomics (2011) 12:337