Stem-loop pti-MIR5475

Accession

MI0018993

Description

Phaeodactylum tricornutum pti-MIR5475 precursor miRNA

Sequence

cgguuuggcgcgaacugcggaaauuuuugcggcugaucgucuugugauaccggauuuacaaguaacgaaaauggacaacuuuaagagucucugugucggggccagugacuggaucgagaucgaagaaugcaaugagaagguauguuguuucucgauuuccugucggucuauuuaucuuuuuugaaugggcgUCGGAGGAUUAACGUCGUUUUuaccaagauc
...(((((...((((.(((..(((((((.((((...(((((((((((........)))))))..)))).................((((.(((.((....))))).)))).(((.((((((((.(((.((((((........)))))))))))))))))..))).(((((((((.......))))))))))))))))))))..))).))))...)))))...

Structure

cgg     cgc    u   ga       g    ugaucgucuugugauaccggauuuacaaguaacgaaaauggacaacuuuaagagucucugugucggggccagugacug   -c        a   u      aga 
   uuugg   gaac gcg  aauuuuu cggc                                                                              gau  gagaucga gaa gcaaug   a
   |||||   |||| |||  ||||||| ||||                                                                              |||  |||||||| ||| ||||||    
   gaacc   UUUG UGC  UUAGGAG GCUg                                                                              cug  cuuuagcu cuu uguugu   g
cua     auU    C   AA       -    ----------------------------------------------------cggguaaguuuuuucuauuuaucugg   uc        -   -      aug 

Annotation confidence Not enough data

Genome context

CM000620.1: 415320-415541 [-]

Mature pti-miR5475

• Accession: MIMAT0022108
• Description: Phaeodactylum tricornutum pti-miR5475 mature miRNA
• Sequence: 192 - UCGGAGGAUUAACGUCGUUUU - 212
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21718527
   Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis
   Huang A, He L, Wang G
   BMC Genomics (2011) 12:337