Stem-loop pti-MIR5480

Accession

MI0018998

Description

Phaeodactylum tricornutum pti-MIR5480 precursor miRNA

Sequence

aaagucuggaGAGACUCGACAGAAACUGCGUGcguacgugccauuuacaguaggcagaauuugauagcugucacagaaagaucgcacagggauuugaguccuggguggaucacgcgagucgcauuucuugaagcuuuggguuagguguaaggcguccuugggccaucuuggacaaaaucaaaaucaaauacuacagugauuuuuuguucaaauaagcucuagaauguaacuucuauucuuccuugauggaugauucacgucgacgaaugugaaauuacucgucgcgaaucuugucugguuauagucguuugucacguuucccuuucguauugugguuuagguagucuuuucucggacggc
...(((((((((((((..((..((((((((((((.(((((.((...((.((((.((((....(((((((.(((.(((((((((.(((.(((((....)))))..)))))))..(((...))).))))))))))))..(((((.(((.(((((...))))).)))...((((((((((....(((((..........)))))))))))))))...)))))(((((......))))).((.(((.....))).))....((.((((((..(((....))))))))))).)))...)))).)))).))....)).)))))........)))).))))))))..)))))).)))).)))))...

Structure

aaa     -    -    CG  AG        -    -------u     c  -uuu  a    g    auuu   agcugucacagaaagaucgcacagggauuugaguccuggguggaucacgcgagucgcauuucuugaagcuuu     agguguaaggcguccuugggccauc          ucaa     aaua 
   gucug gaGA GACU  AC  AAACUGCG UGcg        acgug ca    ac guag caga    gau                                                                        ggguu                         uuggacaaaa    aauca    c
   ||||| |||| ||||  ||  |||||||| ||||        ||||| ||    || |||| ||||    |||                                                                        |||||                         ||||||||||    |||||     
   caggc cuuu cuga  ug  uuuggugu augc        ugcac gu    ug uauu gucu    cua                                                                        cucga                         aacuuguuuu    uuagu    u
cgg     u    u    --  ga        u    uuucccuu     u  uugc  a    g    -guu   ----agcgcugcucauuaaaguguaagcagcugcacuuaguagguaguuccuucuuaucuucaauguaagau     ----------------------aua          ----     gaca 

Annotation confidence Not enough data

Genome context

CM000628.1: 278601-278960 [+]

Mature pti-miR5480

• Accession: MIMAT0022113
• Description: Phaeodactylum tricornutum pti-miR5480 mature miRNA
• Sequence: 11 - GAGACUCGACAGAAACUGCGUG - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21718527
   Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis
   Huang A, He L, Wang G
   BMC Genomics (2011) 12:337