miRBase entry: pti-MIR5483

Stem-loop pti-MIR5483


Accession
MI0019001
Description
Phaeodactylum tricornutum pti-MIR5483 precursor miRNA


Sequence

gagcuggguucaugccugauucaaagaacuguaauuauuaaauggucauucacugucagggaugcaaaucaaaccuauuucaacgguuuugcuuccaacuucauuugaaacgcuugaugaauccuugguuaauacugagccuagugcgaaaaacuggaacuguucuuauauccuuauuuuaauacgggaucggauucgcuguugcacucaggguaaagcucauucuuuccauagucgcuucggugaccAUUUUUUUGGAUCGUGUGAUAUAuaacccgcac
..((.((((((((((..(((((((((((.............(((((((((.........(((.(((((....(((.........)))))))).)))...((((((..........))))))..((((((....))))))......((((.....(((((.((..(((.((((((.....(((((.(.((......)).)))))).....)))))))))..))....)))))...))))...))))))))))))))))))))))))))......))))))..

Structure
ga  u    ------      cu           cuguaauuauuaa         cacugucagggaugcaaaucaaaccuauuucaacgguuuugcuuccaacuucauuugaaacgcuugaugaauccuugguuaauacugagccuagu    aaaac     ---c  uu   a      uauuu     c g  uc 
  gc gggu      ucaugc  gauucaaagaa             auggucauu                                                                                               gcga     uggaa    ug  cuu uauccu     uaaua g ga  g
  || ||||      ||||||  |||||||||||             |||||||||                                                                                               ||||     |||||    ||  ||| ||||||     ||||| | ||   
  cg ccca      AGUGUG  CUAGGUUUUUU             UAccagugg                                                                                               cgcu     accuu    ac  gaa auggga     guugu c cu  g
ca  -    auAUAU      --           -------------         --------------------------------------------------------------------------------------------cuu    --gau     ucuu  uc   -      cucac     - g  ua 


Annotation confidence Not enough data
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Genome context
CM000612.1: 523733-524013 [+]

Database links

Mature pti-miR5483

Accession MIMAT0022116
Description Phaeodactylum tricornutum pti-miR5483 mature miRNA
Sequence 249 - AUUUUUUUGGAUCGUGUGAUAUA - 271
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21718527
    Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis
    Huang A, He L, Wang G
    BMC Genomics (2011) 12:337