miRBase entry: osa-MIR5488

Stem-loop osa-MIR5488


Accession
MI0019006
Description
Oryza sativa osa-MIR5488 precursor miRNA

Literature search
2 open access papers mention osa-MIR5488
(2 sentences)

Sequence

acgcauuugaUGAAGGCGACUGAUGAUUUCAggagacacaagaugaccuugcgcguggugauuggauuuuuacugucauuuucucgcagaaggcacagauuggaucauuacucugaacagcaucacaagcuugcaagaaacacaauccuuuuaaauaaacaaauuuuuuaucuguggaaucagauuaaccauuagauguuuucacagaaguac
..((.((((.((((((((.((((((...((..((..((((.(((((.((((((.(((((((((.(((.....((((..((((((...)))))).))))))).))))))))).......(((.......)))))))))...............((((......)))).)))))))))...)).)).....)))))).)))))))))))).))..

Structure
ac  a    a        A      --AUU  Ag  -ga    a     -----------------------------c      -------------------c         g   uuuua    ca      c 
  gc uuug UGAAGGCG CUGAUG     UC  ga   caca gauga                              cuugcg                    guggugauu gau     cugu  uuuucu  
  || |||| |||||||| ||||||     ||  ||   |||| |||||                              ||||||                    ||||||||| |||     ||||  |||||| g
  ug agac acuuuugu gauuac     ag  cu   gugu cuauu                              gaacgu                    cauuacuag uua     gaca  ggaaga  
ca  a    -        a      caauu  -a  aag    -     uuuuaaacaaauaaauuuuccuaacacaaa      ucgaacacuacgacaagucu         g   -----    -c      c 


Annotation confidence Not enough data
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Genome context
Chr12: 18039131-18039343 [+]

Database links

Mature osa-miR5488

Accession MIMAT0022121
Description Oryza sativa osa-miR5488 mature miRNA
Sequence 11 - UGAAGGCGACUGAUGAUUUCA - 31
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53

  2. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207