miRBase entry: osa-MIR5489

Stem-loop osa-MIR5489


Accession
MI0019007
Description
Oryza sativa osa-MIR5489 precursor miRNA


Sequence

ccacccuugcuuggaugccauugaaacacugcuagcuaaaacauaacuucguccacaaauucaucguugcccuaagaguuugcagacuuguagucauagacucuggugugcaaacuacagagaauacaugaagaauauuuccugaauguccuuucuauuaccuaucugucucaagcaauaggcuuuggagguuucaggaaaccacugcaucugagcuagagagaucaaagaguaaucuggauuuccuugccugCAGGUGUUCUCGAUGGCUUCCuugccuagug
.(((....((..(((.(((((((((((((.............................((((.((((....((..(((((((((.(((.(.((((...))))).))).)))))))).)..)).....)))).)))).(((((((((...((..((((...(((((.(((.....))))))))...)))))).)))))))))...(((((...(.((.((.((((((..(((....))).)))))))).))))))))))))).)))))))).)))..))...)))

Structure
c   ccuu  uu   u        -     ugcuagcuaaaacauaacuucguccacaaauucaucguugcccuaagaguuugcagacuuguagucauagacucuggugugcaaacuacagagaauacaugaagaauauuuccugaauguccuuucuauuaccuaucugucucaagcaauaggcuuuggagguuucaggaaacca     ucu a  u  a      aa   g 
 cac    gc  gga gccauuga aacac                                                                                                                                                                               cugca   g gc ag gagauc  aga u
 |||    ||  ||| |||||||| |||||                                                                                                                                                                               |||||   | || || ||||||  |||  
 gug    cg  CCU CGGUAGCU UUGUG                                                                                                                                                                               GACgu   c cg uc cuuuag  ucu a
-   -auc  uu   U        C     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     --- -  u  -      -g   a 


Annotation confidence Not enough data
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Genome context
Chr11: 23057493-23057776 [-]

Database links

Mature osa-miR5489

Accession MIMAT0022122
Description Oryza sativa osa-miR5489 mature miRNA
Sequence 254 - CAGGUGUUCUCGAUGGCUUCC - 274
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53