miRBase entry: osa-MIR5490

Stem-loop osa-MIR5490


Accession
MI0019008
Description
Oryza sativa osa-MIR5490 precursor miRNA

Literature search
1 open access papers mention osa-MIR5490
(2 sentences)

Sequence

5 reads, 6 reads per million, 2 experiments
gcuacuccauguccuaaagaaaccucauucagaagguguaccuggaugacauguauauacagguacauccuuaagaUUGGAUUUUUAUUUAGGACGGagggaguagg
.(((((((.(((((((((((((..(((.((..((((((((((((...............)))))))).))))..)).)))..)))).)))))))))...))))))).

Structure
g       --a         -    cc   u  ag    -        gaugac 
 cuacucc   uguccuaaa gaaa  uca uc  aagg uguaccug      a
 |||||||   ||||||||| ||||  ||| ||  |||| ||||||||      u
 gaugagg   GCAGGAUUU UUUU  GGU ag  uucc acauggac      g
g       gaG         A    UA   U  aa    u        auauau 


Annotation confidence Not enough data
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Genome context
Chr11: 25091558-25091664 [-]

Database links

Mature osa-miR5490

Accession MIMAT0022123
Description Oryza sativa osa-miR5490 mature miRNA
Sequence 77 - UUGGAUUUUUAUUUAGGACGG - 97
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53