miRBase entry: osa-MIR5502

Stem-loop osa-MIR5502


Accession
MI0019020
Description
Oryza sativa osa-MIR5502 precursor miRNA


Sequence

8 reads, 6 reads per million, 2 experiments
aggauggucugugccgcgguccuucugugucuuggcuugaacaagggcucgugcccaggucccagccucaaacggcgcgggucggggccugcguuaccccgauacgcugaUACGGAUACGGAUACGCGAUACgguguuaccg
.....((((((((.((((((((.((((((((..((((.(.((..((((....))))..)).).)))).........(((.(((((((.........))))))).))).))))))))...)))).)))).)))))....))).

Structure
aggau   ----     c    -    --u        ---------------------------------------uu    u a  aa    u 
     ggu    cugug cgcg gucc   ucuguguc                                         ggcu g ac  gggc c
     |||    ||||| |||| ||||   ||||||||                                         |||| | ||  ||||  
     cca    ggCAU GCGC UAGG   AGGCAUag                                         ccga c ug  cccg g
----g   uugu     A    A    CAU        ucgcauagccccauugcguccggggcugggcgcggcaaacu    c c  ga    u 


Annotation confidence Not enough data
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Genome context
Chr5: 28979936-28980077 [-]

Database links

Mature osa-miR5502

Accession MIMAT0022135
Description Oryza sativa osa-miR5502 mature miRNA
Sequence 111 - UACGGAUACGGAUACGCGAUAC - 132
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53