miRBase entry: osa-MIR5504

Stem-loop osa-MIR5504


Accession
MI0019022
Description
Oryza sativa osa-MIR5504 precursor miRNA

Literature search
3 open access papers mention osa-MIR5504
(8 sentences)

Sequence

8 reads, 8 reads per million, 2 experiments
auugcugaauuuuguucguuggagcuuguucuguuauuuuauuugcacugccguaggaaauacacAGUGACGGGAGGACUGCAAGGuucuucagcuuu
...((((((....(..(.(((.((.((.((((((((((.(((((.(((....)).).)))))...)))))))))).)))).))).)..)))))))...

Structure
auu      uuuu uu g   g  c  g          --u     g -  u 
   gcugaa    g  c uug ag uu uucuguuauu   uauuu c ac g
   ||||||    |  | ||| || || ||||||||||   ||||| | ||  
   cgacuu    c  G AAC UC AG AGGGCAGUGA   auaaa g ug c
uuu      ---- uu G   G  -  G          cac     g a  c 


Annotation confidence Not enough data
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Genome context
Chr10: 17228165-17228262 [-]

Database links

Mature osa-miR5504

Accession MIMAT0022137
Description Oryza sativa osa-miR5504 mature miRNA
Sequence 66 - AGUGACGGGAGGACUGCAAGG - 86
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53