miRBase entry: osa-MIR5508

Stem-loop osa-MIR5508


Accession
MI0019026
Description
Oryza sativa osa-MIR5508 precursor miRNA

Literature search
2 open access papers mention osa-MIR5508
(4 sentences)

Sequence

63 reads, 47 reads per million, 2 experiments
gcuauugaacUAGAUGGCUGAUCUGGUGUGGcuuggcuuuggguaagaaggauuggccucugucuagugccucacuuuccuucugcgguucugucuacuguccugguuuggaagaagucaaaccaagccagaucagccaucuaguugagucuc
...(((.((((((((((((((((((((.(((.((((((((.....(((((((..(((((......)).)))......)))))))(((((.......)))))((......))..)))))))).))).)))))))))))))))))))).)))...

Structure
gcu   g                    G   c        ------------------------gggua       ----uu   -  cu 
   auu aacUAGAUGGCUGAUCUGGU UGG uuggcuuu                             agaagga      ggc cu  g
   ||| |||||||||||||||||||| ||| ||||||||                             |||||||      ||| ||   
   uga uugaucuaccgacuagaccg acc aacugaag                             ucuuccu      ccg ga  u
cuc   g                    a   a        aagguuugguccugucaucugucuuggcg       uucacu   u  uc 


Annotation confidence Not enough data
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Genome context
Chr6: 638203-638355 [-]

Database links

Mature osa-miR5508

Accession MIMAT0022141
Description Oryza sativa osa-miR5508 mature miRNA
Sequence 11 - UAGAUGGCUGAUCUGGUGUGG - 31
Evidence experimental
Illumina [1-2]
Database links

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53

  2. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207