miRBase entry: osa-MIR5510

Stem-loop osa-MIR5510


Accession
MI0019028
Description
Oryza sativa osa-MIR5510 precursor miRNA


Sequence

3 reads, 4 reads per million, 2 experiments
guuggcucaaAGGCUGAUCCACUCCAGAGGAgguuucguaggacagauccccucgauucauugucacucguucauggaucaucccgaugaacauccucaggaguggauugggcuucaagacagca
((((.((..(((.((((((((((((.(((((.(((.(((.(((..(((((...(((...........))).....))))).)))..)))))).))))).)))))))))))).)))..)).)))).

Structure
-    g  ca   G            A     g   u   -a   ca     --ccu   uuca 
 guug cu  aAG CUGAUCCACUCC GAGGA guu cgu  gga  gaucc     cga    u
 |||| ||  ||| |||||||||||| ||||| ||| |||  |||  |||||     |||    u
 cgac ga  uuc gguuaggugagg cuccu caa gua  ccu  cuagg     gcu    g
a    a  ac   g            a     a   -   gc   -a     uacuu   cacu 


Annotation confidence Not enough data
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Genome context
Chr12: 19127914-19128038 [-]

Database links

Mature osa-miR5510

Accession MIMAT0022143
Description Oryza sativa osa-miR5510 mature miRNA
Sequence 11 - AGGCUGAUCCACUCCAGAGGA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53