miRBase entry: osa-MIR5525

Stem-loop osa-MIR5525


Accession
MI0019045
Description
Oryza sativa osa-MIR5525 precursor miRNA


Sequence

4 reads, 3 reads per million, 2 experiments
gauguacaagUGAACCUUGGGAGCGAUCUGAAacgaauuccuuguucucaugaaaauagucaugaaugcggccccaauguguuccaugagauugauccaucccuuuaccgcauuaaaagaaacauuuauccaugccgacaccaaaagguugucuuccuccaaaaugaauuuuucggaucuuuuuugguuuggucucacagcagcauuu
(((((....((((((((((((((.((((((((..((((((.(((...((((((......))))))..((((((.....(((((.((((.(((.(((...((..((((......)))).))...))).)))))))..))))).....)))))).......)))...)))))))))))))).)))))))...))).))))....))))).

Structure
-     acaa    -   ---       C        ac      --c   uucucaugaaaauagucaugaau      ccaau     -c    a   u   cca  cc    cc 
 gaugu    gUGA ACC   UUGGGAG GAUCUGAA  gaauuc   uug                       gcggcc     guguu  caug gau gau   uc  uuua  g
 |||||    |||| |||   ||||||| ||||||||  ||||||   |||                       ||||||     |||||  |||| ||| |||   ||  ||||   
 uuacg    cacu ugg   gguuuuu cuaggcuu  uuuaag   aac                       uguugg     cacag  guac cua uua   ag  aaau  c
u     acga    c   uuu       u        --      uaa   ----------------cuccuuc      aaaac     cc    -   u   caa  -a    ua 


Annotation confidence Not enough data
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Genome context
Chr9: 3904312-3904519 [-]

Database links

Mature osa-miR5525

Accession MIMAT0022160
Description Oryza sativa osa-miR5525 mature miRNA
Sequence 11 - UGAACCUUGGGAGCGAUCUGAA - 32
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53