Stem-loop sequence osa-MIR5534b

Accession MI0019055
Description Oryza sativa miR5534b stem-loop
Gene family MIPF0001324; MIR5534
Stem-loop 
a      ----     ug                 c  gg  a   a  a 
 acuuug    uucga  acaacagcuagaauggc gc  cg cgg gg u
 ||||||    |||||  ||||||||||||||||| ||  || ||| || u
 ugaaau    gagcu  uguugucgaucuuaccg cg  gu gcc cc g
-      cgca     gu                 c  ga  a   c  u
Get sequence
Deep sequencing
71 reads, 2 experiments
Genome context
Coordinates (MSU7) Overlapping transcripts
Chr11: 6404422-6404519 [-]
intergenic
Clustered miRNAs
< 10kb from osa-MIR5534b
osa-MIR5534b Chr11: 6404422-6404519 [-]
osa-MIR5534a Chr11: 6404295-6404396 [-]

Mature sequence osa-miR5534b

Accession MIMAT0022170
Sequence

10 -  

cgaugacaacagcuagaaugg

 - 30

Get sequence
Deep sequencing 23 reads, 1 experiments
Evidence experimental; Solexa [1]

References

1
PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).