Stem-loop sequence cel-mir-5553

Accession

MI0019074 (change log)

Description

Caenorhabditis elegans miR-5553 stem-loop

Stem-loop

   a     cgca     a                  c  c           uuu   u 
5'  agggu    uuuau cgaaauggucuugccacg gc auccauugauu   aaa c
    |||||    ||||| |||||||||||||||||| || |||||||||||   |||  
3'  uccca    aaaua guuuuaucagaacggugc cg uggguaacuaa   uuu u
   -     -aac     c                  a  a           --u   u 

Deep sequencing

176 reads, 0 reads per million, 10 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrX: 8077555-8077664 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from cel-mir-5553

• cel-mir-5553: chrX: 8077555-8077664 [-]
• cel-mir-784: chrX: 8074922-8075009 [-]

Database links

• RNAcentral:URS0000335A2E_6239
• miRBase Tracker:MI0019074

Mature sequence cel-miR-5553-5p

• Accession: MIMAT0022197
• Sequence: 27 - uugccacgcgccauccauugauu - 49
• Evidence: experimental; Illumina [1]

Mature sequence cel-miR-5553-3p

• Accession: MIMAT0022198
• Sequence: 66 - ucaauggguagcacguggcaaga - 88
• Deep sequencing: 169 reads, 9 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000018AE5C_6239

References

1. PMID:21810936 "Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans" Kato M, Chen X, Inukai S, Zhao H, Slack FJ RNA. 17:1804-1820(2011).