miRBase entry: mtr-MIR5554b

Stem-loop mtr-MIR5554b


Accession
MI0019079
Description
Medicago truncatula mtr-MIR5554b precursor miRNA
Gene family
MIPF0000815; MIR2592


Sequence

cagcaugcgaUGUGCAUCUUGAACAAUGGUAUucaagugucaaggaaugcaccucauucuuuugacacuugaauACCAUCGUUGCAGAUGCUCAUCggaugucgg
..((((.(((((.((((((..(((.((((((((((((((((((((((((.....))))).))))))))))))))))))).)))..)))))).))))).))))...

Structure
-ca    g     U      UG   A                   -     c 
   gcau cgaUG GCAUCU  AAC AUGGUAUucaagugucaag gaaug a
   |||| ||||| ||||||  ||| ||||||||||||||||||| ||||| c
   ugua gCUAC CGUAGA  UUG UACCAuaaguucacaguuu cuuac c
ggc    g     U      CG   C                   u     u 


Annotation confidence Not enough data
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Genome context
chr8: 29332267-29332371 [+]

Database links

Mature mtr-miR5554b-5p

Accession MIMAT0022207
Description Medicago truncatula mtr-miR5554b-5p mature miRNA
Sequence 11 - UGUGCAUCUUGAACAAUGGUAU - 32
Evidence experimental
Illumina [1]

Mature mtr-miR5554b-3p

Accession MIMAT0022208
Description Medicago truncatula mtr-miR5554b-3p mature miRNA
Sequence 75 - ACCAUCGUUGCAGAUGCUCAUC - 96
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21762498
    Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
    Wang T, Chen L, Zhao M, Tian Q, Zhang WH
    BMC Genomics (2011) 12:367