Stem-loop sequence mtr-MIR5562

Accession MI0019090
Description Medicago truncatula miR5562 stem-loop
Gene family MIPF0001499; MIR5240
Stem-loop 
auaaaaca     gg        g    a       --     aaugggacgguggcaauaccgaaauggaaucguucaaagauugguccaaaacaacgagaaagcaugggaa 
        guugu  agucuuuu caug aguuucu  ugcug                                                                      g
        |||||  |||||||| |||| |||||||  |||||                                                                       
        caacg  ucggaaga gugu ucaaaga  acgau                                                                      a
ucauacuc     --        g    a       aa     aacgaacuuagcgaauuauaacaacuuguuuaagguuaagaguuuagguaucaaaaacguugggagugua
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Genome context
Coordinates (Mt3.0) Overlapping transcripts
MtChr7: 32194444-32194667 [-]
intergenic

Mature sequence mtr-miR5562-5p

Accession MIMAT0022229
Previous IDs mtr-miR5562
Sequence

11 -  

uguggagucuuuugcaugaag

 - 31

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Evidence experimental; Solexa [1]

Mature sequence mtr-miR5562-3p

Accession MIMAT0022230
Previous IDs mtr-miR5562*
Sequence

198 -  

auguggagaaggcugcaac

 - 216

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Evidence experimental; Solexa [1]

References

1
PMID:21762498 "Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing" Wang T, Chen L, Zhao M, Tian Q, Zhang WH BMC Genomics. 12:367(2011).