miRBase entry: mtr-MIR5563

Stem-loop mtr-MIR5563


Accession
MI0019091
Description
Medicago truncatula mtr-MIR5563 precursor miRNA


Sequence

caauuuuaaaUGAUAUCAGGCAACUCGGUCCuucuguuaacuuggccaacugucaaaccaguaacggaaggACUGAGUUGCCUAAUGUCGUUcauaauugg
(((((...((((((((.((((((((((((((((((((((..(((((.....))))).....)))))))))))))))))))))).))))))))...))))).

Structure
-     uua        C                      ---ac     c 
 caauu   aaUGAUAU AGGCAACUCGGUCCuucuguua     uuggc a
 |||||   |||||||| ||||||||||||||||||||||     ||||| a
 guuaa   UUGCUGUA UCCGUUGAGUCAggaaggcaau     aacug c
g     uac        A                      gacca     u 


Annotation confidence Not enough data
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Genome context
chr4: 42479761-42479861 [+]

Database links

Mature mtr-miR5563-5p

Accession MIMAT0022231
Description Medicago truncatula mtr-miR5563-5p mature miRNA
Sequence 11 - UGAUAUCAGGCAACUCGGUCC - 31
Evidence experimental
Illumina [1]

Mature mtr-miR5563-3p

Accession MIMAT0022232
Description Medicago truncatula mtr-miR5563-3p mature miRNA
Sequence 72 - ACUGAGUUGCCUAAUGUCGUU - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21762498
    Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
    Wang T, Chen L, Zhao M, Tian Q, Zhang WH
    BMC Genomics (2011) 12:367