miRBase entry: sbi-MIR5565e

Stem-loop sbi-MIR5565e


Accession
MI0019098
Description
Sorghum bicolor sbi-MIR5565e precursor miRNA
Gene family
MIPF0001279; MIR5565


Sequence

uaaacgguaagguuUUGUUUGGAUGUUGUCGGAuucaccucaauccacauguuuuggaguagauuaggguggaauuuaguucaaguuccacuccaauucaccccaauacauguggauugaugcgaauccaacuacauccaaacaaggccuaaauauaaguguggauaguguagauaaauauagaagagauagauaugaggauggaaaaggauc
.........(((((((((((((((((.((.((((((.(.(((((((((((((.((((.((.((((.(((((((((((.....))))))))))).)))).)).)))).))))))))))))).).)))))).)).)))))))))))))))))...((((..(((......((((......))))......)))..))))................

Structure
------------------------------------------------------uaaacggua                 U  C      a c             u    a  a    a           a 
                                                               agguuUUGUUUGGAUGU GU GGAuuc c ucaauccacaugu uugg gu gauu ggguggaauuu g
                                                               ||||||||||||||||| || |||||| | ||||||||||||| |||| || |||| ||||||||||| u
                                                               uccggaacaaaccuaca ca ccuaag g aguuagguguaca aacc ca uuaa cucaccuugaa u
cuaggaaaagguaggaguauagauagagaagauauaaauagaugugauaggugugaauauaaa                 u  a      c u             u    c  c    c           c 


Annotation confidence Not enough data
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Genome context
chr9: 6068284-6068496 [+]

Database links

Mature sbi-miR5565e

Accession MIMAT0022243
Description Sorghum bicolor sbi-miR5565e mature miRNA
Sequence 15 - UUGUUUGGAUGUUGUCGGA - 33
Evidence experimental
454 [1]

References

  1. PubMed ID: 21907786
    Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
    "Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R"
    "Genomics (2011) 98:460-468