miRBase entry: sbi-MIR5567

Stem-loop sbi-MIR5567


Accession
MI0019101
Description
Sorghum bicolor sbi-MIR5567 precursor miRNA

Literature search
1 open access papers mention sbi-MIR5567
(3 sentences)

Sequence

uuaucuacauUUAAUGAUUCAUGUAUGUGUCCAAagauucgaugagauggauaaaaaaauuuugauggagaacuaaacagggccuaaggccuuguauaguuuaggucuuguuuaguuccaaaaauuuugcaaaauuuuucagauuccucgucacaucgaaucuuuagacguaugcauggaguauuaaauauagaugaaaauaaaaauuaauugc
(((((((.((((((((.((((((((((((((.((((((((((((.((((((...((((((((((..((((((((((((((((((((((...........)))))))))))))))))))......)))..)))))))))).....)))..))).)))))))))))).)))))))))))))).)))))))).))))))).................

Structure
-----------------       c        A              C            a   --   --uaa          au   ------                   gccu 
                 uuaucua auUUAAUG UUCAUGUAUGUGUC AAagauucgaug gau  gga     aaaaauuuug  gga      gaacuaaacagggccuaag    u
                 ||||||| |||||||| |||||||||||||| |||||||||||| |||  |||     ||||||||||  |||      |||||||||||||||||||    g
                 aguagau uaaauuau agguacguaugcag uuucuaagcuac cug  ccu     uuuuuaaaac  uuu      cuugauuuguucuggauuu    u
cguuaauuaaaaauaaa       a        g              a            a   cu   uagac          gu   aaaaac                   gaua 


Annotation confidence Not enough data
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Genome context
chr10: 52007869-52008082 [-]

Database links

Mature sbi-miR5567

Accession MIMAT0022246
Description Sorghum bicolor sbi-miR5567 mature miRNA
Sequence 11 - UUAAUGAUUCAUGUAUGUGUCCAA - 34
Evidence experimental
454 [1]

References

  1. PubMed ID: 21907786
    Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
    "Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R"
    "Genomics (2011) 98:460-468