miRBase entry: sbi-MIR5565b

Stem-loop sbi-MIR5565b


Accession
MI0019108
Description
Sorghum bicolor sbi-MIR5565b precursor miRNA
Gene family
MIPF0001279; MIR5565


Sequence

guagucagauucacaucaauccacauguguugaggcggguuggagugaaacuggaacuaaauuccacccuaauucacuccAACACAUGUGGAUUGAGGCGAAUCcgaca
...(((.(((((.(.(((((((((((((((((.((.(((((((.(((.................))).))))))).)).))))))))))))))))).).))))).))).

Structure
gua   a     a a                 a  c       a   aaacugg 
   guc gauuc c ucaauccacauguguug gg ggguugg gug       a
   ||| ||||| | ||||||||||||||||| || ||||||| |||       a
   cag CUAAG G AGUUAGGUGUACACAAc uc cuuaauc cac       c
--a   c     C G                 c  a       c   cuuaaau 


Annotation confidence Not enough data
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Genome context
chr10: 55635738-55635846 [-]

Database links

Mature sbi-miR5565b

Accession MIMAT0022253
Description Sorghum bicolor sbi-miR5565b mature miRNA
Sequence 81 - AACACAUGUGGAUUGAGGCGAAUC - 104
Evidence experimental
454 [1]

References

  1. PubMed ID: 21907786
    Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
    "Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R"
    "Genomics (2011) 98:460-468