Stem-loop zma-MIR444a

Accession

MI0019128

Description

Zea mays zma-MIR444a precursor miRNA

Gene family

MIPF0000402; MIR444

Literature search

9 open access papers mention zma-MIR444a
(16 sentences)

Sequence

1437 reads, 2908 reads per million, 3 experiments

caagcuagaggcagcaacugcauaccuugcaagaaaaaaucgguuuuguugacguaccgaugauuuucuugcaaguugUGCAGUUGUUGUCUCAAGCUUg
((((((.(((((((((((((((((.((((((((((((.((((((...........))))))..)))))))))))).))))))))))))))))).))))))

Structure

      a                 c            -a      uuug 
caagcu gaggcagcaacugcaua cuugcaagaaaa  aucggu    u
|||||| ||||||||||||||||| ||||||||||||  ||||||    u
gUUCGA CUCUGUUGUUGACGUgu gaacguucuuuu  uagcca    g
      A                 u            ag      ugca 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR444 family. The primary unspliced transcript contains two exons split by an intron of 3997 nts [1].

Genome context

Unknown

Mature zma-miR444a

• Accession: MIMAT0022261
• Description: Zea mays zma-miR444a mature miRNA
• Sequence: 79 - UGCAGUUGUUGUCUCAAGCUU - 99
• Evidence: not_experimental

References

1. PubMed ID: 21421552
   SplamiR--prediction of spliced miRNAs in plants
   "Thieme CJ, Gramzow L, Lobbes D, Theissen G"
   "Bioinformatics (2011) 27:1215-1223