miRBase entry: zma-MIR444b

Stem-loop zma-MIR444b


Accession
MI0019129
Description
Zea mays zma-MIR444b precursor miRNA
Gene family
MIPF0000402; MIR444

Literature search
8 open access papers mention zma-MIR444b
(12 sentences)

Sequence

1634 reads, 3334 reads per million, 3 experiments
ugacgagcuagaggcagcaacugcauaucuugcaagaaaauugguuuucgaaccauaccgauaauuuucuugcaaguugUGCAGUUGUUGUCUCAAGCUUgcug
...((((((.(((((((((((((((((.(((((((((((((((....(((........)))))))))))))))))).))))))))))))))))).))))))...

Structure
uga      a                 u               guuu   aac 
   cgagcu gaggcagcaacugcaua cuugcaagaaaauug    ucg   c
   |||||| ||||||||||||||||| |||||||||||||||    |||    
   gUUCGA CUCUGUUGUUGACGUgu gaacguucuuuuaau    agc   a
guc      A                 u               ----   cau 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This sequence is a predicted paralogue of the previously identified miR444 family. The primary unspliced transcript contains two exons split by an intron of 7661 nts [1].

Genome context
Unknown

Database links

Mature zma-miR444b

Accession MIMAT0022262
Description Zea mays zma-miR444b mature miRNA
Sequence 80 - UGCAGUUGUUGUCUCAAGCUU - 100
Evidence not_experimental
Database links

References

  1. PubMed ID: 21421552
    SplamiR--prediction of spliced miRNAs in plants
    "Thieme CJ, Gramzow L, Lobbes D, Theissen G"
    "Bioinformatics (2011) 27:1215-1223