Stem-loop sequence hsa-mir-548as

Accession

MI0019132 (change log)

Symbol

HGNC:MIR548AS

Description

Homo sapiens miR-548as stem-loop

Gene family

MIPF0000317; mir-548

Literature search

56 open access papers mention hsa-mir-548as
(170 sentences)

Stem-loop

   --aaaa       c              c 
5'       guaauug ggguuuugccguug u
         ||||||| ||||||||||||||  
3'       uauuaac cccaaaaugguaau u
   uguuug       a              u 

Deep sequencing

4672 reads, 1.69 reads per million, 118 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr13: 92490163-92490220 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000045454 ; GPC5-001; intron 5

  ENST00000377067 ; GPC5-001; intron 5

Database links

• HGNC:MIR548AS
• miRBase Tracker:MI0019132

Mature sequence hsa-miR-548as-5p

• Accession: MIMAT0022267
• Sequence: 1 - aaaaguaauugcggguuuugcc - 22
• Deep sequencing: 4646 reads, 118 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetMiner:hsa-miR-548as-5p
  • TargetScanVert:hsa-miR-548as-5p
  • miRDB:hsa-miR-548as-5p

Mature sequence hsa-miR-548as-3p

• Accession: MIMAT0022268
• Sequence: 37 - uaaaacccacaauuauguuugu - 58
• Deep sequencing: 25 reads, 11 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetMiner:hsa-miR-548as-3p
  • TargetScanVert:hsa-miR-548as-3p
  • miRDB:hsa-miR-548as-3p

References

1. PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).