Stem-loop sequence hsa-mir-548au

Accession

MI0019145 (change log)

Symbol

HGNC:MIR548AU

Description

Homo sapiens miR-548au stem-loop

Gene family

MIPF0000317; mir-548

Literature search

56 open access papers mention hsa-mir-548au
(170 sentences)

Stem-loop

   -------            g   uuu  u 
5'        aaaaguaauugc guu   gc a
          |||||||||||| |||   || u
3'        uuuucauugacg uaa   ug u
   gaccacg            g   uuu  g 

Deep sequencing

12260 reads, 8.61 reads per million, 151 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr9: 93594841-93594894 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000053018 ; SYK-001; intron 1

  OTTHUMT00000053021 ; SYK-004; intron 1

  OTTHUMT00000053020 ; SYK-003; intron 1

  OTTHUMT00000053022 ; SYK-005; intron 1

  OTTHUMT00000053019 ; SYK-002; intron 1

  ENST00000375754 ; SYK-001; intron 1

  ENST00000375751 ; SYK-004; intron 1

  ENST00000375747 ; SYK-003; intron 1

  ENST00000476708 ; SYK-005; intron 1

  ENST00000375746 ; SYK-002; intron 1

Database links

• HGNC:MIR548AU
• RNAcentral:URS000075B121_9606
• miRBase Tracker:MI0019145

Mature sequence hsa-miR-548au-5p

• Accession: MIMAT0022291
• Sequence: 1 - aaaaguaauugcgguuuuugc - 21
• Deep sequencing: 12208 reads, 151 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000075CAF3_9606
• Predicted targets:
  • TargetMiner:hsa-miR-548au-5p
  • TargetScanVert:hsa-miR-548au-5p
  • miRDB:hsa-miR-548au-5p

Mature sequence hsa-miR-548au-3p

• Accession: MIMAT0022292
• Sequence: 34 - uggcaguuacuuuugcaccag - 54
• Deep sequencing: 52 reads, 14 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetMiner:hsa-miR-548au-3p
  • TargetScanVert:hsa-miR-548au-3p
  • miRDB:hsa-miR-548au-3p

References

1. PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).