miRBase entry: cin-mir-5598

Stem-loop cin-mir-5598


Accession
MI0019162
Description
Ciona intestinalis cin-mir-5598 precursor miRNA


Sequence

69 reads, 31 reads per million, 2 experiments
GUGGUUAGCGCGCCUGCCcguaacccagagggaaUGGGUUCAAGGCUCGUCGCUGCUAC
(((((.(((((((((((((((..((....))..))))))...))))..).)))))))))

Structure
     U    - --    ---      aa  c 
GUGGU AGCG C  GCCU   GCCcgu  cc a
||||| |||| |  ||||   ||||||  ||  
CAUCG UCGC G  CGGA   UGGGUa  gg g
     -    U CU    ACU      ag  a 


Annotation confidence Not enough data
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Genome context
scaffold_140: 274944-275002 [-]

Database links

Mature cin-miR-5598-5p

Accession MIMAT0022319
Description Ciona intestinalis cin-miR-5598-5p mature miRNA
Sequence 1 - GUGGUUAGCGCGCCUGCC - 18
Evidence not_experimental

Mature cin-miR-5598-3p

Accession MIMAT0022320
Description Ciona intestinalis cin-miR-5598-3p mature miRNA
Sequence 35 - UGGGUUCAAGGCUCGUCGCUGCUAC - 59
Evidence not_experimental

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52