miRBase entry: cin-mir-5602

Stem-loop cin-mir-5602


Accession
MI0019167
Description
Ciona intestinalis cin-mir-5602 precursor miRNA


Sequence

67 reads, 28 reads per million, 2 experiments
UUUGGUAUCGCACAAUGGGUAAaacuuccaaccaacuucauAACCGCGUGACGAUAUCAAAC
(((((((((((((..(((.........................))).))).)))))))))).

Structure
-          -   AA   GUAAaacuucc 
 UUUGGUAUCG CAC  UGG           a
 |||||||||| |||  |||           a
 AAACUAUAGC GUG  GCC           c
C          A   -C   AAuacuucaac 


Annotation confidence Not enough data
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Genome context
3p: 2824378-2824439 [-]

Database links

Mature cin-miR-5602-5p

Accession MIMAT0022329
Description Ciona intestinalis cin-miR-5602-5p mature miRNA
Sequence 1 - UUUGGUAUCGCACAAUGGGUAA - 22
Evidence not_experimental

Mature cin-miR-5602-3p

Accession MIMAT0022330
Description Ciona intestinalis cin-miR-5602-3p mature miRNA
Sequence 42 - AACCGCGUGACGAUAUCAAAC - 62
Evidence not_experimental

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52