miRBase entry: cin-mir-5604

Stem-loop cin-mir-5604


Accession
MI0019169
Description
Ciona intestinalis cin-mir-5604 precursor miRNA


Sequence

53 reads, 19 reads per million, 2 experiments
AAGUUUCACAGAAGAGGAACAAcaaguUUUCUCUACAUUUUGUGCUGCAG
..((..(((((((((((((........)))))))....))))))..))..

Structure
AA  UU      ----       CAA 
  GU  CACAGA    AGAGGAA   c
  ||  ||||||    |||||||    
  CG  GUGUUU    UCUCUUU   a
GA  UC      UACA       uga 


Annotation confidence Not enough data
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Genome context
1q: 2698255-2698304 [+]

Database links

Mature cin-miR-5604-5p

Accession MIMAT0022333
Description Ciona intestinalis cin-miR-5604-5p mature miRNA
Sequence 1 - AAGUUUCACAGAAGAGGAACAA - 22
Evidence not_experimental

Mature cin-miR-5604-3p

Accession MIMAT0022334
Description Ciona intestinalis cin-miR-5604-3p mature miRNA
Sequence 28 - UUUCUCUACAUUUUGUGCUGCAG - 50
Evidence not_experimental

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52