Stem-loop ath-MIR5628

Accession

MI0019199

Description

Arabidopsis thaliana ath-MIR5628 precursor miRNA

Sequence

ggaacggucgagaugacuaaccgauauuauaGAAAUAGCGAAGAUAUGAUUAuagaagaaucaaccaucuuuugguuucuucuugauuuuucuauaaucauaucuucauuauuuucauaauauugguuaaucaucucgaccguucg
.(((((((((((((((.(((((((((((((.(((((((.((((((((((((((((((((((((((((.....)))).......)))))))))))))))))))))))).))))))).))))))))))))).))))))))))))))).

Structure

g               c             a       C                        -------    u 
 gaacggucgagauga uaaccgauauuau GAAAUAG GAAGAUAUGAUUAuagaagaauca       acca c
 ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||       |||| u
 cuugccagcucuacu auugguuauaaua uuuuauu cuucuauacuaauaucuuuuuagu       uggu u
g               a             c       a                        ucuucuu    u 

Annotation confidence Not enough data

Genome context

chr5: 17985850-17985995 [+]

Mature ath-miR5628

• Accession: MIMAT0022387
• Description: Arabidopsis thaliana ath-miR5628 mature miRNA
• Sequence: 32 - GAAAUAGCGAAGAUAUGAUUA - 52
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176