Stem-loop sequence ath-MIR5629

Accession

MI0019200 (change log)

Description

Arabidopsis thaliana miR5629 stem-loop

Stem-loop

   uuauuuuuaauuugga               g                           a              cuaucaaaaaguugguauaaucguaccuccgaguuaacuuccgucaacuacccuaacggaaacauauucguauaaucaagaaaagcgauuguacuuauuuacauaau 
5'                 cguuuaauaccucua uauuuaauuuggaagaaaaauaccuua uuaauuuugguuac                                                                                                           u
                   ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||                                                                                                           a
3'                 gcaaauuauggagau auaaauuaaaccuucuuuuuguggaau aauuaaaaccaaug                                                                                                           a
   ----------------               g                           c              aauaauuuugaaagcaaaaaauuuuucaaccauauuagaauggaagcucaauugaaggcaauugaugggauugccuuaacaauugacaccaauuuugaauugaguac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr5: 3802714-3803062 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00007AC8FB_3702
• miRBase Tracker:MI0019200

Mature sequence ath-miR5629

• Accession: MIMAT0022388
• Sequence: 220 - uuaggguaguuaacggaaguua - 241
• Evidence: experimental; Illumina [1]

References

1. PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis" Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN Genome Res. 22:163-176(2012).